You are not slow DM, but I think a bit of terminology clarification may be in order here. Normally, one would set the boom downhaul stop cleat, the one that has the horn cleat screwed into the tube that rides in the mast slot, at the highest position one can for best headroom, while being able to raise the main fully and get good luff tension. Doesn't matter whether you raise the main first, then push the boom down and cleat it off as GL does, or cleat off first then raise the main as I do. This is the "set and forget" boom DH stop position, at least until you get new sails!
Knurled round knob or lever type track stops can be used for any number of purposes, including, but not limited to, holding sail slugs above the slot opening in the absence of a mast gate, or holding the gooseneck up higher when the main is not raised, be that for more headroom while motoring, or for deploying a boom tent, etc. It would be impractical to use the horn/tube DH cleat for this purpose.
Or, if one is a serious racer, one prolly has a fixed gooseneck, and doesn't care about all of this nonsense! ;-P
Thanks for the clarification Tim! I have been calling that system with the downhaul line to tighten the main on the horn cleat a "Cunningham" (though it technically is probably not, but "Cunningham" is fun to say, so it has stuck). I usually pull it tight after first raising the main. After that, I pretty much forget about it like you said.