Slim:
Sorry to read that you are having CB issues. Answering your question, no I have not made a CNC Centerboard, but I can outline the process:
-Make a 3D Virtual Model of your Centerboard, preferably using a NACA profile (which you may want to flatten a bit for when the CB is partially retracted). You can use CAD or your favorite modeling tool (Blender, 3DS Max, etc).
-Convert the model to .dxf format, if it's not native to your 3d Tool. Adobe has a free (I think) converter tool.
-Program Tool Paths onto your dxf file, this is highly machine-specific (which 3-axis CNC cutter table you are using), so there's a learning curve.
-Cut your blank, flip it over, cut the other side, cut a pivot hole, etc, etc.
Now, I'm assuming that the CNC table is big enough to cut the entire board, you'll still need to carefully index the positioning so that you can flip it over and cut the other side. What will your CB be made of? Wood Core then cover with epoxy and glass? Or HDPE (cutting board plastic), can you get a blank that is big enough? Either way, you have to consider weight, it can't be over 25 lbs but you also dont want it to float, so you may have to add lead (if wood). And then you may have to re-enforce the pivot point, again depending on your material.
Yes, I'm writing all this to "scare you off." I really, really can't see learning modeling and 3D CNC cutting being worth is JUST for this project. If you want a project to learn from and then do other CNC, then go for it, of course.
In the meantime, assuming that your CB is beyond the point of repair, what CAN you do? Best option is probably "just throw money at it." A new CB is $650ish at drmarine.com, add crating and shipping you're probably near $800. Painful, but so is building a new CB. However, if you ARE going to build, the way to do it (IMHO) is laminating vertical strips of a decent hardwood (oak?) into a black, then cutting that blank to shape with a router. You could also laminate together a blank out of marine ply, but I don't trust it not to eventually warp. Either way, you shape the foil portion by cutting half-profiles of your desired NACA shape into plywood, and then gluing them to the blank as a routing guide. Pictures will explain better than words, check out these links:
https://www.arwenmarine.com/NewsRoG152.htmlhttps://www.arwenmarine.com/NewsRoG1201.htmlhttps://www.arwenmarine.com/NewsRoG1192.htmlhttps://www.arwenmarine.com/NewsRoG1193.htmlhttps://www.arwenmarine.com/NewsRoG1221.htmlhttps://www.arwenmarine.com/NewsRoG1209.htmlYou'll still need to glass the blank afterwards, of course. The other way to do it, as I wrote above, is HDPE. I've never worked with it, but supposedly you can work it with normal woodworking tools. No idea if you can laminate it though!
Overall, between CB blank material, glass cloth, epoxy, router bits, clamps, blood, sweat, tears... you really may be better off paying the $800. Horses for courses....
Good luck and fair winds!
Tom